Umut Can Coskun, Funda Kus, Ateeq Ur Rehman, Berna Morova, Merve Gulle, Hatice Baser, Demet Kul, Alper Kiraz, Kemal Baysal, and Ahmet Erten. An Easy-to-Fabricate Microfluidic Shallow Trench Induced Three-Dimensional Cell Culturing and Imaging (STICI3D) Platform. ACS Omega 2022 7 (10), 8281-8293 DOI: 10.1021/acsomega.1c05118
Aydemir D, Surucu S, Basak AN, Ulusu NN. Evaluation of the Hematological and Serum Biochemistry Parameters in the Pre-Symptomatic and Symptomatic Stages of ALS Disease to Support Early Diagnosis and Prognosis Cells 2022, 11, 3569. https://doi.org/10.3390/cells11223569
Aydemir D, Ulusu NN. The possible importance of the antioxidants and oxidative stress metabolism in the emerging monkeypox disease: An opinion paper. Front Public Health. 2022 Oct 20; 10:1001666. doi: 10.3389/fpubh.2022.1001666
Aydemir D, Ulusu NN. An old mobbing story and COVID-19. Journal of Basic and Clinical Health Sciences, 2022;6(3):977-980. doi:10.30621/jbachs.1091295
Anapali M, Kaya-Dagistanli F, Akdemir AS, Aydemir D, Ulusu NN, Ulutin T, Uysal O, Tanriverdi G, Ozturk M. Combined resveratrol and vitamin D treatment ameliorate inflammation-related liver fibrosis, ER stress, and apoptosis in a high-fructose diet/streptozotocin-induced T2DM model. Histochem Cell Biol. 2022 Sep;158(3):279-296. doi: 10.1007/s00418-022-02131-y.
Tomruk A, Ozgur-Buyukatalay E, Ozturk GG, Ulusu NN. Short-term exposure to radiofrequency radiation and metabolic enzymes’ activities during pregnancy and prenatal development. Electromagn Biol Med. 2022 Jul 29:1-9. doi: 10.1080/15368378.2022.2104309.
Aydemir D, Eren I, Demirhan M, Ulusu NN. Evaluation of the Cell Behavior and Growth Characteristics of the Porcine Dermal Xenograft Patch in Relation to the Surface Properties. Front Bioeng Biotechnol. 2022 May 30;10:811446. doi: 10.3389/fbioe.2022.811446. PMID: 35706504; PMCID: PMC9189373.
Aydemir D, Malik AN, Kulac I, Basak AN, Lazoglu I, Ulusu NN. Impact of the Amyotrophic Lateral Sclerosis Disease on the Biomechanical Properties and Oxidative Stress Metabolism of the Lung Tissue Correlated with the Human Mutant SOD1G93A Protein Accumulation. Front Bioeng Biotechnol. 2022 Feb 25;10:810243. doi: 10.3389/fbioe.2022.810243.
Celebi G, Anapali M, Dagistanli FK, Akdemir AS, Aydemir D, Ulusu NN, Ulutin T, Komurcu-Bayrak E. Effect of vitamin D supplementation on OPG/RANKL signaling activities in endothelial tissue damage in diet-induced diabetic rat model. Pharmacol Rep. 2022 Feb;74(1):124-134. doi: 10.1007/s43440-021-00332-1.
Ozan Kocadagli, Arzu Baygul, Neslihan Gokmen, Said Incir, Cagdas Aktan, Clinical prognosis evaluation of COVID-19 patients: An interpretable hybrid machine learning approach. Current Research in Translational Medicine,Volume 70, Issue 1, 2022, https://doi.org/10.1016/j.retram.2021.103319
MGG Onem, C Coker, K Baysal, S Altunyurt, P Keskinoglu The effects of pre-pregnancy obesity and gestational weight gain on maternal lipid profiles, fatty acids and insulin resistance Journal of Perinatal Medicine. 2021; 49 (7), 873-883.
Celebi G, Anapali M, Dagistanli FK, Akdemir AS, Aydemir D, Ulusu NN, Ulutin T, Komurcu-Bayrak E. Effect of vitamin D supplementation on OPG/RANKL signalling activities in endothelial tissue damage in diet-induced diabetic rat model. Pharmacol Rep. 2022 Feb;74(1):124-134. doi: 10.1007/s43440-021-00332-1. Epub 2021 Oct 16. PMID: 34657267
Aydemir D, Ulusu NN. Correspondence: Importance of the validated serum biochemistry and hemogram parameters for rapid diagnosis and to prevent false negative results during COVID-19 pandemic. Biotechnol Appl Biochem. 2021 Apr;68(2):390-391. doi: 10.1002/bab.1936.
Aydemir D, Salman N, Karimzadehkhouei M, Alaca BE, Turan B, Ulusu NN. Evaluation of the Effects of Aging on the Aorta Stiffness in Relation with Mineral and Trace Element Levels: an Optimized Method via Custom-Built Stretcher Device. Biol Trace Elem Res. 2021 Jul;199(7):2644-2652. doi: 10.1007/s12011-020-02380-9.
Aydemir D, Ulusu NN. People with blood disorders can be more vulnerable during COVID-19 pandemic: A hypothesis paper. Transfus Apher Sci. 2021 Jun;60(3):103080. doi: 10.1016/j.transci.2021.103080.
Ozcan M, Aydemir D, Bacanlı M, Anlar HG, Ulusu NN, Aksoy Y. Protective Effects of Antioxidant Chlorophyllin in Chemically Induced Breast Cancer Model In vivo. Biol Trace Elem Res. 2021 Feb 24. doi: 10.1007/s12011-021-02585-6.
Aydemir D, Dağlıoğlu G, Candevir A, Kurtaran B, Bozdogan ST, Inal TC, Ulusu NN. COVID-19 may enhance risk of thrombosis and hemolysis in the G6PD deficient patients. Nucleosides Nucleotides Nucleic Acids. 2021;40(5):505-517. doi: 10.1080/15257770.2021.1897457.
Aydemir D, Dogru S, Alaca BE Ulusu NN. Impact of the surface modifications and cell culture techniques on the biomechanical properties of PDMS in relation to cell growth behavior. International Journal of Polymeric Materials and Polymeric Biomaterials 2021 International Journal of Polymeric Materials and Polymeric Biomaterials DOI: 10.1080/00914037.2021.1919670
Incir S, Tasdemir M, Kocak B, Yelken B, Arpali E, Akyollu B, Palaoglu KE, Baygul A, Bilge I, Turkmen A. Improving the urine spot protein/creatinine ratio by the estimated creatinine excretion to predict proteinuria in pediatric kidney transplant recipients. Pediatric Transplantation. 2021 Nov;25(7):e14142. PMID: 34523202 DOI: 10.1111/petr.14142
Incir S, Komesli Z, Baygul A, Tasdemir ZA, Palaoglu KE, Kant H, Kapmaz M, Tekin S, Kilic A, Dagel T, Okan A. Immature platelet fraction: is a novel early predictive marker for disease severity in patients with Covid-19 pneumonia?. Turkish Journal of Biochemistry. 2021 Aug 1;46(4):359-66. DOI:10.1515/tjb-2021-0070
Kanbay M, Guler B, Ertuglu LA, Dagel T, Afsar B, Incir S, Baygul A, Covic A, Andres-Hernando A, Sánchez-Lozada LG, Lanaspa MA. The Speed of Ingestion of a Sugary Beverage Has an Effect on the Acute Metabolic Response to Fructose. Nutrients. 2021 Jun;13(6):1916. PMID: 34199607 PMCID: PMC8228203 DOI: 10.3390/nu13061916
Gönenli MG, Komesli Z, Incir S, Yalçın O, Akay OM. Rotational Thromboelastometry Reveals Distinct Coagulation Profiles for Patients With COVID-19 Depending on Disease Severity. Clinical and Applied Thrombosis/Hemostasis. 2021 Jun 28;27:10760296211027653. PMID: 34184563 PMCID: PMC8246486 DOI: 10.1177/10760296211027653
Yeşiltepe-Mutlu G, Çapacı M, Can E, Gökçe T, Bayrakçı G, Muradoğlu S, Incir S, Çakır EP, Hatun Ş. A comparison of glycemic parameters and their relationship with C-peptide and Proinsulin levels during partial remission and non-remission periods in children with type 1 diabetes mellitus – a cross-sectional study. BMC Endocr Disord. 2021 Jan 23;21(1):18. doi: 10.1186/s12902-021-00681- PMID:33485357; PMCID: PMC7825237.
Erus S, Öztürk AB, Albayrak Ö, Incir S, Kapdağlı MH, Cesur EE, Yavuz Ö, Tanju S, Dilege Ş. Immune profiling after minimally invasive lobectomy. Interact Cardiovasc Thorac Surg. 2021 Jan 22;32(2):291-297. doi: 10.1093/icvts/ivaa296. PMID: 33313777 DOI: 10.1093/icvts/ivaa296.
Kalafat UM, Bildik B, Dogan S, Tapkan RB, Dorter M, Kalafat AF, Tapkan B, Incir S, Cander B. Evaluation of protective effect of L-carnitine and N-acetylcysteine in mesenteric ischemiareperfusion injury model in rats. Annals of Clinical and Analytical Medicine.2021; 12(2), 134-138., Doi: 10.4328/ACAM.20212.
Mut TT, Acar Ö, Armutlu A, Incir S, Uhlig A, Ertuglu LA, Özel M, Taskin AC, Baydar DE, Kanbay M, Esen T. Can remote ischemic preconditioning counteract the renal functional deterioration attributable to partial nephrectomy under warm ischemia? Results of an animal study. BMC nephrology. 2021 Dec;22(1):1-8. PMID: 34271871 PMCID: PMC8285842 DOI: 10.1186/s12882-021- 02359-1.
Incir S, Palaoglu KE. Evaluation of the performance of sysmex XN-3100 automated hematology analyzer regarding the sysmex XE-2100 and microscopic examination. Turkish J Biochem. 2021;46(1):27–35. doi:10.1515/tjb-2020-0004
Incir S, Taşdemir M, Palaoglu KE, Kant Calti H, Baygül A, Bilge I. Can immature granulocyte count and hemogram indices be good predictors of urinary tract infection in children?. International Journal of Medical Biochemistry. 2021;4(3):178-84. DOI: 10.14744/ijmb.2021.52523.
Yurtseven E.; Ural D.; Baysal K.; Tokgözoğlu L. An Update on the Role of PCSK9 in Atherosclerosis. Journal of Atherosclerosis and Thrombosis. 2020 Volume 27 Issue 9 Pages 909-918 http://doi.org/10.5551/jat.55400.
Karakilic-Ozturan E, Karaman S, Soguksu P, Mese S, Agacfidan A, Mutlu UD, Karakas Z, Tugcu D, Karagenc-Ozkan A, Devecioglu O. The Role of Anti-Neutrophil Antibodies in the Etiologic Classification of Childhood Neutropenia: A Cross-Sectional Study in a Tertiary Center. J Pediatr Hematol Oncol. 2020 Mar;42(2):107-112. doi: 10.1097/MPH.0000000000001710. PMID: 31895216.
Aydemir D, Ulusu NN. Is glucose-6-phosphate dehydrogenase enzyme deficiency a factor in Coronavirus-19 (COVID-19) infections and deaths? Pathog Glob Health. 2020 May;114(3):109-110. doi: 10.1080/20477724.2020.1751388. Epub 2020 Apr 14. PMID: 32286926; PMCID: PMC7241485.
Dogru S, Aydemir D, Salman N, Ulusu NN, Alaca BE. Impact of PDMS surface treatment in cell-mechanics applications. J Mech Behav Biomed Mater. 2020 Mar;103:103538. doi: 10.1016/j.jmbbm.2019.103538. Epub 2019 Nov 15. PMID: 31760274.
Aydemir D, Ulusu NN. Commentary: Challenges for PhD students during COVID-19 pandemic: Turning crisis into an opportunity. Biochem Mol Biol Educ. 2020 Sep;48(5):428-429. doi: 10.1002/bmb.21351. Epub 2020 Apr 9. PMID: 32271978; PMCID: PMC7262270.
Samadi A, Ziaee M, Isikhan SY, Ulusu NN, Samadi M. Effects of treatment with haloperidol and clozapine on the plasma concentrations of thyroid hormones in rats. Endocr Regul. 2020 Apr 1;54(2):71-76. doi: 10.2478/enr-2020-0009. PMID: 32597158.
Aydemir D, Ulusu NN. Correspondence: Angiotensin-converting enzyme 2 coated nanoparticles containing respiratory masks, chewing gums and nasal filters may be used for protection against COVID-19 infection. Travel Med Infect Dis. 2020 Sep-Oct;37:101697. doi: 10.1016/j.tmaid.2020.101697. Epub 2020 Apr 23. PMID: 32335209; PMCID: PMC7195061.
Aydemir D, Ulusu NN. Influence of Lifestyle Parameters – Dietary Habit, Chronic Stress and Environmental Factors, Jobs – on the Human Health in Relation to the COVID-19 Pandemic. Disaster Med Public Health Prep. 2020 Jun;14(3):e36-e37. doi: 10.1017/dmp.2020.222. Epub 2020 Jun 25. PMID: 32580815; PMCID: PMC7387745.
Aydemir D, Simsek G, Ulusu NN. Dataset of the analyzing trace elements and minerals via ICP-MS: Method validation for the mammalian tissue and serum samples. Data Brief. 2020 Feb 3;29:105218. doi: 10.1016/j.dib.2020.105218. PMID: 32071990; PMCID: PMC7016227.
Aydemir D, Hashemkhani M, Acar HY, Ulusu NN. Evaluation of the biocompatibility of the GSH-coated Ag2S quantum dots in vitro: a perfect example for the non-toxic optical probes. Mol Biol Rep. 2020 Jun;47(6):4117-4129. doi: 10.1007/s11033-020-05522-3. Epub 2020 May 20. PMID: 32436042.
Aydemir D, Ulusu NN. Comment on the: Molecular mechanism of CAT and SOD activity change under MPA-CdTe quantum dots induced oxidative stress in the mouse primary hepatocytes (Spectrochim Acta A Mol Biomol Spectrosc. 2019 Sep 5; 220:117104). Spectrochim Acta A Mol Biomol Spectrosc. 2020 Mar 15;229:117792. doi: 10.1016/j.saa.2019.117792. Epub 2019 Dec 14. PMID: 31865110.
Aydemir D, Ulusu NN. Importance of the serum biochemical parameters as potential biomarkers for rapid diagnosis and evaluating preclinical stage of ALS. Med Hypotheses. 2020 Aug;141:109736. doi: 10.1016/j.mehy.2020.109736. Epub 2020 Apr 13. PMID: 32315925.
Aydemir D, Ulusu NN. The role of biotin metabolism in the COVID-19 infection. Turkish Journal of Biochemistry. Turkish Journal of Biochemistry-Turk Biyokimya Dergisi Volume: 45 Issue: 6 Pages: 671-672 DOI: 10.1515/tjb-2020-0231 DEC 2020
Aydemir D, Ulusu NN. Impact of COVID-19 pandemic on academic research and being demotivated. Anadolu Psikiyatri Dergisi-Anatolian Journal of Psychiatry Volume: 21 Issue: 6 Pages: 666-666 DEC 2020
Aydemir D, Ulusu NN. Commentary: Challenges for PhD students duringCOVID-19 pandemic: Turning crisis into an opportunity. Biochemistry and Molecular Biology Education Volume: 48 Issue: 5 Pages: 428-429 Special Issue: SI DOI: 10.1002/bmb.21351Published: SEP 2020
Aydemir D, Ulusu NN Are Angiotensin II receptor blockers for hypertension a gleam of hope or not against COVID-19 infection?” to Journal of Basic and Clinical Health Sciences Volume: 4 Issue: 3 Pages: 394-396. 2020. DOI: 10.30621/jbachs.2020.1153
Aydemir D, Ulusu NN. The possible role of the glucose-6-phosphate dehydrogenase enzyme deficiency in the polyneuropathies” Journal of Basic and Clinical Health Sciences Volume: 4 Issue: 3 Pages: 212-217. 2020. DOI: 10.30621/jbachs.2020.1151
Aydemir D, Ulusu NN. Influence of the life style parameters including dietary habit, chronic stress and environmental factors and jobs on the human health in relation to COVID-19 pandemic. Disaster Med Public Health Prep. 2020 Jun 25:1-4. doi: 10.1017/dmp.2020.222.
Aydemir D, Oztascı B, Barlas N, Ulusu NN. Influence of the butylparaben administration on the liver, kidney and spleen. Turkish Journal of Biochemistry-Turk Biyokimya Dergisi Volume: 4Issue: 6Pages: 689-694Published: DEC 2020 Doi.10.1515/tjb-2020-0048 Published online: 27 Jul 2020
Aydemir D, Gecili F, Ozdemir N, Ulusu NN. Synthesis and characterization of a triple enzyme-inorganic hybrid nanoflower (TrpE@ihNF) as a combination of three pancreatic digestive enzymes amylase, protease and lipase. Journal of Bioscience and Bioengineering Volume 129, Issue 6, June 2020, Pages 679-686 DOI: 10.1016/j.jbiosc.2020.01.008
Aydemir D, Ulusu NN. Identifying and solving scientific problems in the medicine: Key to become a competent scientist. Turkish Journal of Biochemistry Volume 45, Issue 2, April 2020 DOI: 10.1515/tjb-2018-0357
Aydemir D, Sarayloo E, Ulusu NN. Rosiglitazone-induced changes in the oxidative stress metabolism and fatty acid composition in relation with trace element status in the primary adipocytes. J Med Biochem 39: 3, 267-275, 2020. DOI: 10.2478/jomb-2019-0041
Bildik G, Akin N, Esmaeilian Y, Hela F, Yildiz CS, Iltumur E, Incir S, Karahuseyinoglu S, Yakin K, Oktem O. Terminal differentiation of human granulosa cells as luteinization is reversed by activin-A through silencing of Jnk pathway. Cell Death Discov. 2020 Sep 23;6:93. doi: 10.1038/s41420-020-00324-9. PMID: 33042587; PMCID: PMC7511402.
Vatansever D, Incir S, Bildik G, Taskiran C, Oktem O. In-vitro AMH production of ovarian tissue samples in culture correlates with their primordial follicle pool. Eur J Obstet Gynecol Reprod Biol. 2020 Nov;254:138-140. doi: 10.1016/j.ejogrb.2020.09.002. Epub 2020 Sep 21. PMID: 32971433.
Aslan G, Afsar B, Sag AA, Camkiran V, Erden N, Yilmaz S, Siriopol D, Incir S, You Z, Garcia ML, Covic A, Cherney DZI, Johnson RJ, Kanbay M. The Effect of Urine pH and Urinary Uric Acid Levels on the Development of Contrast Nephropathy. Kidney Blood Press Res. 2020;45(1):131-141. doi: 10.1159/000504547. Epub 2019 Dec 20. PMID: 31865342.
lncir S, Calti HK, Palaoglu KE. The role of immature granulocytes and inflammatory hemogram indices in the inflammation. Int J Med Biochem. 2020;3(3):125-30. doi: 10.14744/ijmb.2020.02986.
Öztürk G, Silav G, Incir S, Arslanhan A, Akçetin MA, Toktaş OZ, Konya D. Ratlarda Deneysel Spinal Kord Hasar Modelinde Genisteinin Nöroprotektif Etkisinin Araştırılması, Diffüz Tensor Görüntüleme ile Değerlendirilmesi. İstanbul Gelişim Üniversitesi Sağlık Bilimleri Dergisi. 2020(11):130-49. doi: https://doi.org/10.38079/igusabder.742525.
Aydemir D, Oztascı B, Barlas N, Ulusu NN. Effects of the butylparaben on the glutathione-dependent and -independent anti-oxidant enzyme metabolisms” Archives of Industrial Hygiene and Toxicology, Vol. 70 No. 4, 2019 315-324.
Aydemir D, Hashemkhani M, Acar HY, Ulusu NN. In vitro interaction of glutathione S-transferase-pi enzyme with glutathione-coated silver sulfide quantum dots: A novel method for biodetection of glutathione S-transferase enzyme. Chem Biol Drug Des. 2019 Dec;94(6):2094-2102. doi: 10.1111/cbdd.13614
Aydemir D, Karabulut G, Şimşek G, Gok M, Barlas N, Ulusu NN. Data the DEHP induced changes on the trace element and mineral levels in the brain and testis tissues of rats. Data in Brief Volume: 26, 104526, p 1-7, 2019. DOI: 10.1016/j.dib.2019.104526
Kayadibi H, Yapar D, Akdogan O, Ulusu NN, Baykam N. Title: Diagnostic utility of Hitit index to distinguish patients with and without Crimean Congo Hemorrhagic fever disease. Ticks and Tick-Borne Diseases Volume 10, Issue 5, August 2019, Pages 1035-1040.
Aydemir D, Hashemkhani M, Durmusoglu EG, Yagci Acar H, Ulusu NN. A new substrate for glutathione reductase: Glutathione coated Ag2S quantum dots. Talanta 194, 501-506, 2019.
Ulusu NN, Gok M, Erman B, Turan B. The Effects of Timolol Treatment on Streptozotocin-Induced Diabetic Rats Pancreatic enzymes: An Experimental and Computational Study. J Med Biochem 38: 1–11, 2019.
Tatar C, Ahlatci FA, Idiz UO, Nayci AE, Incir S, Agcaoglu O, Idiz C, Balik E. May Nesfatin-1 be a Biomarker in Acute Mesenteric Ischemia? J Coll Physicians Surg Pak. 2019 Oct;29(10):928-931. doi: 10.29271/jcpsp.2019.10.928. PMID:31564263.
Ferhatoglu MF, Kıvılcım T, Senol K, Vural G, Kartal A, Incir S, Filiz Aİ, Kebudi A. The Positive Effects of the Human Amniotic Membrane on the Healing of Staple Line After Sleeve Gastrectomy Applied Long-Evans Rat Model. Obes Surg. 2019 Nov;29(11):3560-3568. doi: 10.1007/s11695-019- 04027-8. PMID: 31187460.
Ulus, G; Koparal, AT; Baysal, K; Yetik Anacak, G; Yavasoglu, NUK The anti-angiogenic potential of (+/-) gossypol in comparison to suramin Cytotechnology Volume: 70 Issue: 6 Pages: 1537-1550 Published: DEC 2018
Gurdal, M., Barut Selyer, g., Baysal, K., Durak I. Comparison of culture media indicates a role for autologous serum in enhancing phenotypic preservation of rabbit limbal stem cells in explant culture. Cytotechnology 2018; 70, pages: 687±700. https://doi.org/10.1007/s10616-017-0171-7 .
Aydemir D, Karabulut G, Şimşek G, Gok M, Barlas N, Ulusu NN. Impact of the Di(2-Ethylhexyl) Phthalate Administration on Trace Element and Mineral Levels in Relation of Kidney and Liver Damage in Rats. Biol Trace Elem Res. 2018 Dec;186(2):474-488. doi: 10.1007/s12011-018-1331-0. Epub 2018 Apr 13.
Bulbul MC, Dagel T, Ulusu NN, Afsar B, Covic A, Kanbay M. Disorders of Lipid Metabolism in Chronic Kidney Disease. Blood Purif. 2018;46(2):144-152. doi: 10.1159/000488816. Epub 2018 Apr 27.
Samadi A, Khademansari, MH, Ulusu NN. Effects of alprazolam and haloperidol on thyroglobulin, antithyroglobulin, anti-thyroid peroxidase and TSH in Rat. Turk J Biochem 2018; 43(1): 57–63. DOI: https://doi.org/10.1515/tjb-2017-0003
Kanbay M, Aslan G, Afsar B, Dagel T, Siriopol D, Kuwabara M, Incir S, Camkiran V, RodriguezIturbe B, Lanaspa MA, Covic A, Johnson RJ. Acute effects of salt on blood pressure are mediated by serum osmolality. J Clin Hypertens (Greenwich). 2018 Oct;20(10):1447-1454. doi: 10.1111/jch.13374. Epub 2018 Sep 19. PMID: 30232829.
Doğan R, Aksoy F, Goktas SS, Kocak I, Yıldırım YS, Incir S, Özturan O. Effect of nasal antihistamine on secretory IgA in nasal lavage of rats. Eur Arch Otorhinolaryngol. 2018 Jan;275(1):111-115. doi: 10.1007/s00405-017-4750-1. Epub 2017 Oct 19. PMID: 29052012.